The physical world is a simple thing that's not useful to study too much, once intelligence scales well past the human level. Almost all cognition is going to be about the computations designed by cognition (or their semantics), not about the physical world, which is likely to be almost entirely relegated to the role of compute substrate for the intentionally designed computations. All of the physical world might one day be about as relevant to most people as the arcane details of material manufacturing processes necessary to make a specialized industrial tool they were never aware of.
So I don't think decision theory for agent foundations should be concerned with the kinds of uncertainty that are central to thinking about the physical world. Instead, it should study reasoning about known computations, and influence of decisions on the behavior of known computations. These are not toy examples that in some ways pose unusual difficulties and in other ways are easier to handle, but rather most of what matters.
Ah, ok. I agree on "unclear" so we disagree less than I thought. I could see an analogous case of: "Maybe in the future, there will be many low-intelligence agents, because there will be some governance system that forces all agents except one to be low-intelligence, for security reasons. We should be extensively studying low-intelligence agents in agent foundations for this reason." And some but not all reasons why this is not a compelling argument for studying low-intelligence agents (in agent foundations) translate to studying "agents with no quantum tech".